pysam

A Python script that converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. CIGAR string of SAM format is used to compute the end coordinate.

A port of [pyVCF](https://github.com/jamescasbon/PyVCF) using Cython for speed.

Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.

Python library for blazing-fast genomic interval operations and genomic file formats I/O on Polars DataFrames

Python wrapper for [bedtools](https://github.com/arq5x/bedtools).

Pythonic access to FASTA files.