sam2interval
A Python script that converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. CIGAR string of SAM format is used to compute the end coordinate.
README
Galaxy Tools maintained by the Galaxy Team This repo contains a subset of Galaxy tools used in the Tool Shed (https://toolshed.g2.bx.psu.edu/) mostly created by the Galaxy Team (devteam). The repo's main goals are to: simplify the maintenance of these tools provide a learning environment to Galaxy Tool developers If you want to contribute to this repository, please see file CONTRIBUTING.md. Wrapping tools for use in Galaxy is easy! If you want to start, please see our wiki. Other repositories…
- Repository
- github.com/galaxyproject/tools-devteam
Source attribution
- GitHub — github.com/galaxyproject/tools-devteam
- bio.tools — snpfreq
- bio.tools — sam2interval
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