Find open-source science resources

Cross-domain directory aggregating tools, AI models, datasets, and research resources from bio.tools, Bioconductor, HuggingFace, curated GitHub awesome-lists, and more.

8 of 5,674 resources

Scalable toolkit for analyzing single-cell gene expression data, including preprocessing, visualization, clustering, and trajectory inference.

A VCF Parser for Python.

Python wrapper for [samtools](https://github.com/samtools/samtools).

Pythonic access to FASTA files.

Python wrapper for [bedtools](https://github.com/arq5x/bedtools).

Python library for blazing-fast genomic interval operations and genomic file formats I/O on Polars DataFrames

Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.

A port of [pyVCF](https://github.com/jamescasbon/PyVCF) using Cython for speed.