NuclearPhaser

A Python script that converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. CIGAR string of SAM format is used to compute the end coordinate.

The Chromosome Ontology is an automatically derived ontology of chromosomes and chromosome parts.

A diffusion language model for genome-scale perturbation prediction across diverse cellular contexts.

seqlib is a type-safe Rust library for working with DNA and RNA sequences.

Finds SNP sites from a multi-FASTA alignment file.

Minigraph is a sequence-to-graph mapper and graph constructor. For graph generation, it aligns a query sequence against a sequence graph and incrementally augments an existing graph with long query subsequences diverged from the graph.