manta
Structural variant callers
Structural variant and indel caller for mapped sequencing data.
- Repository
- github.com/illumina/manta
Source attribution
- Awesome Bioinformatics — github.com/illumina/manta
Related resources
lumpy: a general probabilistic framework for structural variant discovery.
Structural variant discovery by integrated paired-end and split-read analysis.
GRIDSS: the Genomic Rearrangement IDentification Software Suite.
structural variant calling and genotyping with existing tools, but,smoothly.