lumpy
lumpy: a general probabilistic framework for structural variant discovery.
README
NOTE: This is LUMPY 0.2.13 with additional changes to allow lumpyexpress to function when the main file is a CRAM, not a BAM. The splitters and discordants must still be BAM files as LUMPY itself doesn't yet support CRAM as an input. This requires the hexdump command be available. For questions and discussion about LUMPY please visit the forum at: https://groups.google.com/forum/#!forum/lumpy-discuss LUMPY ===== A probabilistic framework for structural variant discovery. Ryan M Layer, Colby…
- Repository
- github.com/arq5x/lumpy-sv
Source attribution
- Awesome Bioinformatics — github.com/arq5x/lumpy-sv
- GitHub — github.com/arq5x/lumpy-sv
Related resources
Structural variant discovery by integrated paired-end and split-read analysis.
Structural variant and indel caller for mapped sequencing data.
GRIDSS: the Genomic Rearrangement IDentification Software Suite.
structural variant calling and genotyping with existing tools, but,smoothly.