GATK
Variant Calling
Variant Discovery in High-Throughput Sequencing Data.
- Repository
- github.com/broadgsa/gatk
Source attribution
- Awesome Bioinformatics — github.com/broadgsa/gatk
Related resources
Deep learning-based variant caller
Bayesian haplotype-based polymorphism discovery and genotyping.
A polymorphic bayesian genotyping model with wide applicability.
samtools/bcftools are a suite of tools for manipulating NGS data and can be used to call variants.