freebayes
Variant Calling
Bayesian haplotype-based polymorphism discovery and genotyping.
- Repository
- github.com/ekg/freebayes
Source attribution
- Awesome Bioinformatics — github.com/ekg/freebayes
Related resources
Deep learning-based variant caller
Variant Discovery in High-Throughput Sequencing Data.
A polymorphic bayesian genotyping model with wide applicability.
samtools/bcftools are a suite of tools for manipulating NGS data and can be used to call variants.