Find open-source science resources

A Workflow Management System geared towards scientific workflows.

a specification for describing analysis workflows and tools that are portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments.

A small language for defining pipeline stages and linking them together to make pipelines.

A cross-system scripting language for working with big data pipelines in computer systems of different sizes and capabilities.

Create an index on a compressed text file.

Write-once-read-many table for large datasets.

Table file index.

Sort genomic files according to a specified order.

Fast FASTQ filtering by matching reads against one or more regex patterns.

A wee tool for random access into BGZF files.

Easily submitting PBS jobs with script template. Multiple input files supported.

Another cross-platform, efficient, practical and pretty CSV/TSV toolkit.

Utilities for working with CSV/Tab-delimited files.

Syntax Highlighting for Computational Biology file formats (SAM, VCF, GTF, FASTA, PDB, etc...) in vim/less/gedit/sublime.

Modular and universal bioinformatics, Bionode provides pipeable UNIX command line tools and JavaScript APIs for bioinformatics analysis workflows.

Git repo of useful single line commands.

A compressor of common genomic file formats (BAM, CRAM, FASTQ, VCF etc).

Easily get SRA download links and other information.

Go Get Data; A command line interface for obtaining genomic data.

Java framework for processing biological data.

Biocaml aims to be a high-performance user-friendly library for Bioinformatics.

A Go library and command line utility for engineering organisms.

The modern C++ library for sequence analysis.

Rust implementations of algorithms and data structures useful for bioinformatics.

Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.

International association of users & developers of open source Perl tools for bioinformatics, genomics and life sciences.