bioSyntax

Command Line Utilities

Syntax Highlighting for Computational Biology file formats (SAM, VCF, GTF, FASTA, PDB, etc...) in vim/less/gedit/sublime.

Source attribution

  • Awesome Bioinformaticsgithub.com/biosyntax/biosyntax

Related resources

Git repo of useful single line commands.

Modular and universal bioinformatics, Bionode provides pipeable UNIX command line tools and JavaScript APIs for bioinformatics analysis workflows.

Utilities for working with CSV/Tab-delimited files.

Another cross-platform, efficient, practical and pretty CSV/TSV toolkit.

Easily submitting PBS jobs with script template. Multiple input files supported.

A wee tool for random access into BGZF files.