spatialDE
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
README
spatialDE The spatialDE package provides an R wrapper for the Python SpatialDE library, using reticulate and basilisk. SpatialDE, by Svensson et al., 2018, is a method to identify spatially variable genes (SVGs) in spatially resolved transcriptomics data. This package started as part of the BiocSpatialChallenges. Installation instructions Get the latest stable R release from CRAN. Then install spatialDE from Bioconductor using the following code: The development version of spatialDE can be…
- Repository
- github.com/sales-lab/spatialde
Source attribution
- GitHub — github.com/sales-lab/spatialde
- Bioconductor — spatialDE
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