SKESA
Assembly
SKESA is a de-novo sequence read assembler for microbial genomes. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality without significantly compromising contiguity.
- Repository
- github.com/ncbi/skesa
Source attribution
- Awesome Bioinformatics — github.com/ncbi/skesa
Related resources
SPAdes (St. Petersburg genome assembler) is an assembly toolkit containing various assembly pipelines and the de-facto standard for prokaryotic genome assemblies.