sesame
Tools For analyzing Illumina Infinium DNA methylation arrays. SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.
- Repository
- github.com/zwdzwd/sesame
Source attribution
- Bioconductor — sesame
Related resources
RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale.
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
Tools to analyze & visualize Illumina Infinium methylation arrays.