scPassport
Stamps Seurat, SingleCellExperiment, and SummarizedExperiment objects with a persistent metadata passport. For Seurat objects the passport is stored in the misc slot; for SingleCellExperiment and SummarizedExperiment objects it is stored in the metadata slot. Tracks animal info, experiment details, lineage (parent/child relationships), RDS registry numbers, processing logs, and custom fields. Includes an interactive Shiny gadget to fill and update the passport, and a read mode to print the full passport to console. The passport persists inside the RDS file with no external files needed.
README
scPassport 🧬 A passport system for single-cell objects. Stamp your Seurat, SingleCellExperiment, or SummarizedExperiment data with full metadata, lineage tracking, and processing logs — all stored inside the .rds file itself. Installation What It Does Every object gets a passport that travels with it forever: | Object Type | Passport Location | Processing Log Location | |---|---|---| | Seurat | @misc$passport | @misc$processinglog | | SingleCellExperiment | metadata(obj)$passport |…
- Repository
- github.com/sedatkacar56/scpassport
Source attribution
- GitHub — github.com/sedatkacar56/scpassport
- Bioconductor — scPassport
Related resources
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