scBFA
This package is designed to model gene detection pattern of scRNA-seq through a binary factor analysis model. This model allows user to pass into a cell level covariate matrix X and gene level covariate matrix Q to account for nuisance variance(e.g batch effect), and it will output a low dimensional embedding matrix for downstream analysis.
- Repository
- github.com/ucdavis/quon-titative-biology
Source attribution
- GitHub — github.com/ucdavis/quon-titative-biology
- Bioconductor — scBFA
Related resources
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