sangeranalyseR
This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.
- Bioconductor
- https://bioconductor.org/packages/sangeranalyseR
Source attribution
- Bioconductor — sangeranalyseR
Related resources
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