pyensembl
Data
Actively maintained400updated 1 week ago
Python
Apache-2.0
Pythonic Access to the Ensembl database.
README
PyEnsembl PyEnsembl is a Python interface to Ensembl reference genome metadata such as exons and transcripts. PyEnsembl downloads GTF and FASTA files from the Ensembl FTP server and loads them into a local database. PyEnsembl can also work with custom reference data specified using user-supplied GTF and FASTA files. Example Usage Installation PyEnsembl requires Python 3.9 or later. You can install PyEnsembl using pip: This should also install any required packages such as datacache. Before…
- Repository
- github.com/openvax/pyensembl
Source attribution
- Awesome Bioinformatics — github.com/openvax/pyensembl
- GitHub — github.com/openvax/pyensembl
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