OLIN
Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data
- Bioconductor
- https://bioconductor.org/packages/OLIN
Source attribution
- Bioconductor — OLIN
Related resources
The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.
Importation, normalization, visualization, and quality control functions to correct identified sources of variability in array-CGH experiments.
Functions for performing print-run and array level quality assessment.
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations.