metapod
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
README
Meta-analyses on p-values of differential analyses |Build|Status| |-----|----| | Bioc-release | | | Bioc-devel | | This package implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. It was initially designed for meta-analysis of differentially binding statistics in ChIP-seq, but can be applied to any situation with many grouped or parallel sets of p-values. Check out the user's guide on the Bioconductor landing page for more details.
- Repository
- github.com/ltla/metapod
Source attribution
- GitHub — github.com/ltla/metapod
- Bioconductor — metapod
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