Circlator
Sequence assembly
Python
GD
Circlator is a tool to circularize genome assemblies. It will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.
- Repository
- github.com/sanger-pathogens/circlator
Source attribution
- bio.tools — circlator
Related resources
JCVI is a versatile toolkit for comparative genomics analysis. It is a collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.