ARRmNormalization
Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.
Source attribution
- Bioconductor — ARRmNormalization
Related resources
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
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15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.