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Cross-domain directory aggregating tools, AI models, datasets, and research resources from bio.tools, Bioconductor, HuggingFace, curated GitHub awesome-lists, and more.

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The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.

73 years ago
TeX
CC0-1.0

CCSO is an educational ontology acting as a data model for concepts and entities within an academic setting, enabling also the annotation of potentially available resources. The ontology aims to conceptualize educational entities within Curriculum and Syllabus with appropriate coverage and quality, in order to support rich services on top for improving curriculum management and automatically enabling syllabus semantic processes. (from homepage)

05 months ago
HTML
GPL-3.0

An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.

06 years ago

An extension of Schema.org to annotate metadata on software projects

3481 month ago
Python
Apache-2.0

An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.

06 years ago

An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.

06 years ago

Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation.

102 months ago
Jupyter Notebook
MIT

An EMMO-based domain ontology for atomistic and electronic modelling.

12 months ago
Python
CC-BY-4.0

A representation of variables appearing in models in the environmental research space.

44 days ago
HTML

Algorithm Metadata Vocabulary is a vocabulary for capturing and storing the metadata about the algorithms (a procedure or a set of rules that is followed step-by-step to solve a problem, especially by a computer). There are uncountable algorithms present in every area (e.g., Computer Science, Mathematics), which makes it hard for specialists, academicians, application engineers, and so forth to discover, distinguish, select, and reuse them. [from repository]

03 years ago
Python
CC0-1.0

The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page).

141 year ago
Makefile
CC-BY-4.0

This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.

491 year ago
Jupyter Notebook
52 weeks ago
Python

This ontology integrates cell type markers for cells in the Cell Ontology from various sources along with details of marker context (anatomical context, assay), confidence (where available) and provenance. [from repository]

12 months ago
Python
624 years ago
HTML

The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web.

42 months ago

Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.

Der Thesaurus enthält Vokabular zu allen ökonomischen Themenstellungen: über 6.000 Schlagwörter und über 28.000 zusätzliche Synonyme als Zugangshilfe, um individuelle Formulierungen bei der Suche aufzufangen. Auch Fachbegriffe aus benachbarten Bereichen wie z.B. Recht, Soziologie oder Politik sowie Geobegriffe sind dort zu finden. Wenn Sie Schlagwörter aus diesem Vokabular auswählen, können Sie sicher sein Treffer zu erhalten, die zu dem gewünschten Sachgebiet passen. [from homepage]

This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from <https://prefix.zazuko.com/about>)

The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).

This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.

The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.

Metabolites in the Xenobiotics Metabolism Database.

This is a vocabulary collection utilized by XHTML Family modules and document types using XHTML Modularization, including XHTML Role and XHTML + RDFa as defined in rdfa-syntax. The XHTML specifications are developed by the W3C XHTML 2 Working Group as part of the W3C HTML Activity. [from homepage]