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Cross-domain directory aggregating tools, AI models, datasets, and research resources from bio.tools, Bioconductor, HuggingFace, curated GitHub awesome-lists, and more.
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5,674 resources indexed
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ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for compounds that compete with probes for binding to target proteins.
A hybrid chemical enyclopedia and supplier advertizing system for chemicals.
The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to entries in the ChemFOnt ontology that are used to organize individual chemicals. Terms can be looked up using the following URL (https://www.chemfont.ca/ontology_browse/term_info/18), but not directly by ID
The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to individual chemicals.
Tissues used to annotate cells and cell lines, cross-referenced to EFO, BTO, UBERON, and CALOHA
This controlled vocabulary contains terms to describe the mechanism of action for a chemical-target interaction. The terms can be retrieved from ACTION_TYPE table in ChEMBL's SQL dump and are used to annotate the DRUG_MECHANISM table. Because these aren't really identifiers, they are transformed by lowercasing and replacing spaces with dashes to form 'identifiers'. The pattern in the Bioregistry record contains an enumeration of the 33 allowed values as of ChEMBL v35.
A tag in the ChemBioSys data platform
A study in the ChemBioSys data platform
A strain in the ChemBioSys data platform
A publication in the ChemBioSys data platform
A project in the ChemBioSys data platform
An organism in the ChemBioSys data platform
A model in the ChemBioSys data platform
An investigation in the ChemBioSys data platform
An institution in the ChemBioSys data platform
A dataset in the ChemBioSys data platform
A assay in the ChemBioSys data platform
Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)
Lists the types of persistent identifiers that CESSDA accepts as study level PIDs in its data catalogue.
This vocabulary holds the definitions and descriptions of the collections included in the CESSDA Data Catalogue.
Names of organisations providing metadata for CESSDA Data Catalogue.
A vocabulary service for the social sciences, covering the Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences.
Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments
Assigns identifiers to collections of datasets indexed by CELLxGENE. CELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types.
The set of prefixes used in the Cellosaurus resource
Cellosaurus identifeirs for publications, like Pubmed
CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.
A vocabulary for learning resource types
The Common Entity Data Standards (CEDS) Domain Entity Schema (DES) provides a hierarchy of domains, entities, categories, and elements. It is intended for use primarily by people as an index to search, map, and organize elements in a logical way. [from homepage]